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Cytosim
PI
Cytoskeleton Simulator
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The Actor is a Hand, and can thus bind and unbind from fibers.
The Actor currently does nothing else. It exists as a template, or as a class that can be used when new functionalities are needed
See Examples and the Parameters of Actor.
Public Member Functions | |
| Actor (ActorProp const *p, HandMonitor *h) | |
| constructor | |
| ~Actor () | |
| destructor | |
| void | stepUnloaded () |
| simulate when this is attached but not under load | |
| void | stepLoaded (Vector const &force) |
| simulate when this is attached and under load | |
Public Member Functions inherited from Hand | |
| Hand (HandProp const *, HandMonitor *h) | |
| constructor More... | |
| virtual | ~Hand () |
| destructor | |
| virtual bool | attachmentAllowed (FiberBinder &site) |
| tell if attachment at given site is possible More... | |
| virtual void | attach (FiberBinder &site) |
| attach the hand at the position described by site More... | |
| virtual void | detach () |
| detach | |
| virtual void | stepFree (const FiberGrid &, Vector const &pos) |
| simulate when the Hand is not attached More... | |
| virtual void | handleOutOfRange (FiberEnd) |
| this is called when the attachment point is outside the Fiber's range | |
| void | attachTo (Fiber *, real ab, FiberEnd from) |
| attach to the given position on the given Fiber (calls attach(FiberBinder)) | |
| void | attachToEnd (Fiber *, FiberEnd end) |
| attach to the given end on the given Fiber (calls attach(FiberBinder)) | |
| void | read (InputWrapper &, Simul &) |
| read | |
| void | write (OutputWrapper &) const |
| write | |
Public Member Functions inherited from FiberBinder | |
| FiberBinder () | |
| construct as unattached | |
| FiberBinder (Fiber *f, real a) | |
| construct at the given distance from the origin | |
| void | relocate (Fiber *f) |
| move to a different fiber, at same abscissa | |
| void | relocate (Fiber *f, real a) |
| move to a different fiber, at given position | |
| void | moveToEnd (FiberEnd end) |
| move to the specified FiberEnd (CENTER is also a valid argument) | |
| void | moveTo (real abs) |
| move along the Fiber to specified abscissa, or detach | |
| void | moveBy (real dabs) |
| move along the Fiber by the abscissa offset dabs, or detach | |
| bool | attached () const |
| true if attached | |
| Fiber * | fiber () const |
| Fiber to which this is attached, or zero if not attached. | |
| Vector | pos () const |
| position in space | |
| Vector | dir () const |
| direction of Fiber obtained by normalization | |
| Vector | dirFiber () const |
| the direction of the Fiber at the point of attachment | |
| real | abscissa () const |
| the abscissa, from the origin of the Fiber | |
| real | abscissaFrom (FiberEnd from) const |
| abscissa, counted from the specified FiberEnd (in reversed direction for the PLUS_END) | |
| FiberEnd | nearestEnd () const |
| nearest end to the point specified by the abscissa from the origin | |
| bool | withinP () const |
| true if abscissa is below abscissaP | |
| bool | withinM () const |
| true if abscissa is above abscissaM | |
| bool | within () const |
| true if abscissa is within the fiber boundaries | |
| const PointInterpolated & | interpolation () const |
| the interpolation | |
| void | updateBinder () |
| set a valid PointInterpolated | |
| void | checkFiberRange () |
| check the abscissa against the edges of the fiber, calling handleOutOfRange() if necessary. | |
| FiberBinder * | next () const |
| a static_cast<> of Node::next() | |
| FiberBinder * | prev () const |
| a static_cast<> of Node::prev() | |
| void | checkAbscissa () const |
| check that fbAbs is within Fiber::abscissaM() and Fiber::abscissaP() | |
| int | bad () const |
| check validity of the interpolation (debuging purposes) | |
Public Member Functions inherited from Node | |
| Node () | |
| constructor set as unlinked | |
| virtual | ~Node () |
| destructor More... | |
| bool | linked () const |
| true if Node is linked | |
| Node * | next () const |
| the next Node in the list, or zero if this is last | |
| Node * | prev () const |
| the previous Node in the list, or zero if this is first | |
| NodeList * | list () const |
| the list where the object is linked, or zero | |
| ObjectSet * | objset () const |
| return associated ObjectSet | |
Additional Inherited Members | |
Public Attributes inherited from Hand | |
| HandProp const * | prop |
| Property. | |
Protected Member Functions inherited from Hand | |
| bool | testDetachment () |
| test for detachment with rate prop->unbinding_rate More... | |
| bool | testKramersDetachment (real force) |
| test for detachment with Kramers theory More... | |
Protected Attributes inherited from Hand | |
| HandMonitor * | haMonitor |
| the monitor associated with this Hand | |
| real | nextAttach |
| Gillespie normalized time for attachment. | |
| real | nextDetach |
| Gillespie normalized time for detachment. | |
Protected Attributes inherited from FiberBinder | |
| Fiber * | fbFiber |
| the Fiber on which it is attached, or 0 if not attached | |
| real | fbAbs |
| the abscissa from the Fiber origin | |
Protected Attributes inherited from Node | |
| Node * | nNext |
| the next Node in the list | |
| Node * | nPrev |
| the previous Node in the list | |